NESG header image

NESG Web-based tools

Decorative ASDP image label ASDP
ASDP is an automated NMR NOE assignment engine. It uses a distinct bottom-up topology-constrained approach for iterative NOE interpretation and generates 3D structures of the protein that is as close to the true structure as possible.
Decorative Primer Primer image label Primer Prim'er
Primer Prim'er designs PCR primer sets for endonuclease
and viral recombinase based cloning stratagies.

Decorative PXS (probability of crystal structure) calculator image label pXs (probability of crystal structure) calculator
pXs calculates the probability of a given protein sequence to yield
a X-Ray structure.

Decorative PSVS (protein structure validation software) image label PSVS (Protein Structure Validation Software suite)
PSVS is used for assessment of protein structures generated from
NMR, X-ray crystallographic and homology modeling methods.

Decorative RPF (recall, precistion, and F-measure scores) image label RPF (Recall, Precision, and F-measure scores)
Structure quality assessment measurements based on information retrieval statistics

Decorative Dismeta (disorder prediction meta-server) image label Dismeta - Disorder prediction meta-server
Dismeta polls a number of disorder predictors and reports the results of each.
Consensus disorder is plotted per residue.

Decorative NESG wiki page image label NESG NMR wiki
The NESG wiki shares experimental protocols as well as training and educational materials in the fields of structural biology, structural genomics and biomolecular NMR.

Decorative AutoAssign Software image label AutoAssign
AutoAssign is a constraint-based expert system for automating the analysis of
backbone resonance assignments using NMR spectra.

Decorative Structure Superposition with FindCore and PDBstat image label Structure Superposition with FindCore and PDBstat
A structure superimposition server using ordered residues or core residues,
based on PdbStat and FindCore respectively.

Decorative AVS (chemical shift assignment validation server) image label AVS - Chemical Shift Assignment Validation Server
AVS is used to validate chemical shift data, flagging shifts that are outside
the range typically observed in proteins.

Decorative NESG homology model database search image label NESG Homology Model Database Search
Search the NESG homology model database for your protein sequence.

Decorative Mark-us (functional annotation server) image label Mark-us - Function Annotation Server
MarkUs identifies related protein structures and sequences, detects protein cavities,
and calculates the surface electrostatic potentials and amino acid conservation profile

Decorative HOMA (homology modeling automatically) image label HOMA (Homology Modeling Automatically)
Homology modeling server that generates models by satisfying sets
of spatial restraints dervided from the provided template.

Decorative NMR 2.0 image label NMR 2.0
NMR 2.0 provides a collection of collaborative and instructive tools
to advance NMR studies.